Mornings can be hectic, and if you’re like most people, finding time for a healthy, satisfying breakfast can be a challenge. Whether you’re rushing to work, getting the kids ready, or just trying to start your day on the right foot, having a quick, grab-and-go meal can make all the difference. That’s where make-ahead breakfasts come in! Instead of reaching for something processed or skipping breakfast altogether, prepping your meals in advance can help you fuel your body with something nutritious and homemade—without the stress.
One of my favorite meal-prep breakfasts?
These flaky filo breakfast cups filled with eggs, chicken sausage, scallions, onions, and melted mozzarella cheese. They’re light, crispy, protein-packed, and can be made in advance for busy mornings. The best part? They look and taste gourmet but require minimal effort, making them a perfect choice whether you’re making breakfast for yourself or impressing guests at brunch.

There are countless benefits to making breakfast ahead of time, and it’s not just about saving a few minutes in the morning. When you prep your breakfast in advance, you set yourself up for healthier eating habits, avoiding the temptation of sugary, processed alternatives. Many store-bought breakfast foods are loaded with preservatives, artificial flavors, and too much sugar. But with homemade breakfast cups, you have full control over the ingredients, ensuring you’re eating something fresh and nutritious. Plus, these filo cups are perfectly portioned, giving you a balanced meal of protein, healthy fats, and carbs without overdoing it.
Another advantage of meal prepping is reducing food waste. If you find yourself throwing away eggs, cheese, or veggies because you don’t use them in time, making batch breakfasts like these filo cups ensures that everything is put to good use. Not to mention, they’re incredibly versatile. You can switch up the ingredients each time, trying different cheeses, proteins, and vegetables to keep things exciting.
Now, let’s talk about how to make these flaky, golden filo breakfast cups. They’re incredibly easy to make and come together in just 30 minutes using a muffin tray.
Ingredients (Makes 6-8 Cups)
- 6-8 sheets filo pastry, thawed
- 3 tbsp butter, melted (or olive oil)
- 4 eggs
- 2 chicken sausage links, cooked & crumbled
- 2 scallions, finely chopped
- ½ small onion, diced
- ½ cup mozzarella cheese, shredded
- ½ tsp salt
- ¼ tsp black pepper
- Cooking spray (for muffin tin)

Step-By-Step Instructions
Step 1: Prep the Filo Pastry Cups
- Preheat your oven to 375°F (190°C).
- Lightly spray a muffin tin with cooking spray.
- Lay one sheet of filo dough on a clean surface and brush lightly with melted butter. Layer 2-3 more sheets, brushing each one with butter.
- Cut the stacked filo sheets into squares large enough to fit into the muffin tin. Gently press each stack into the muffin cups, forming little pastry “nests.”
Step 2: Prepare the Filling
- In a pan over medium heat, sauté the onions and chicken sausage for 2-3 minutes until fragrant. Stir in the scallions and cook for another minute. Remove from heat.
- In a bowl, whisk together the eggs, salt, and pepper. Stir in the mozzarella cheese and cooked sausage mixture.
Step 3: Assemble & Bake
- Spoon the egg mixture evenly into each filo cup, filling about ¾ of the way full.
- Bake for 12-15 minutes, or until the eggs are set and the filo is golden and crispy.
- Let cool for a few minutes before gently removing from the muffin tin.

One of the best things about these filo breakfast cups is that they store beautifully. If you’re planning to eat them throughout the week, simply store them in an airtight container in the fridge for up to three days. When you’re ready to enjoy one, just pop it in the oven at 350°F for 5-7 minutes or microwave it for 30 seconds. If you want to keep them for longer, these cups freeze exceptionally well. Let them cool completely, wrap them individually in plastic wrap, and store them in a freezer-safe bag for up to a month. When you’re ready to eat, reheat directly from frozen in a 375°F oven for 10-12 minutes, and they’ll be as crispy and delicious as the day you made them.
The best part about these breakfast cups? They’re completely customizable! You can switch out the chicken sausage for turkey sausage, crispy bacon, or even smoked salmon for a fancier twist. If you’re a cheese lover, swap the mozzarella for sharp cheddar, creamy goat cheese, or tangy feta. And for extra nutrition, toss in some spinach, mushrooms, or sun-dried tomatoes. The possibilities are endless, and you can make a new variation every week to keep things interesting.
While these filo breakfast cups are great on their own, pairing them with a few extras can turn them into a complete meal. Try serving them with avocado slices for a creamy, healthy fat boost, a side of fresh fruit for a refreshing contrast, or even a small mixed greens salad to create a café-style brunch at home.

Meal prepping breakfast doesn’t have to mean eating the same boring thing every day. These filo breakfast cups prove that make-ahead meals can be delicious, beautiful, and satisfying. Whether you’re a busy professional, a parent juggling morning routines, or someone who just wants to enjoy a flaky, flavorful breakfast without the morning rush, this recipe is a total winner.
Make a batch this weekend and enjoy stress-free mornings all week long!
Happy eating!
<3 Ann